Improved sequence trace quality estimation.Improved topology detection when using the New DNA File dialog.Improved the detection of regulatory features.Added tooltips to the type and qualifier controls in the feature dialogs.Improved the default name used by the New File from Selection dialog in many contexts.Enhanced export of primer data to include options for primer length, % GC, and MW.Enabled export of all primer data if no primers are selected.Enabled drag and drop for opening files in the launch dialog, or loading files in an action dialog, or aligning sequences with the alignment list box.Modified the Import Primer from a List dialog to choose by default the last list used.Modified the Add|Import|Detect Features|Primers dialogs to remember the last column used for sorting.Added the ability to detect common features in inserted sequences.Configured the default behavior to open documents and windows on the primary display, or if other windows have been opened, on the last display that was used.Improved zooming into selected features and primers when no DNA selection is present.New “Symbols and Abbreviations” window, accessible from the Help menu.New “Analyze Selected Primer(s)” command in the Primers menu, for direction to IDT’s OligoAnalyzer website.Support for the following GenBank feature qualifiers:.Support for the following GenBank feature types:.Opening of previously generated alignments in SnapGene Viewer.Highlighting of matches for searches in both the view and the relevant scroll bar.Japanese language option for the entire interface.SnapGene can now open the following protein file formats: DNADynamo, DNASTAR (EditSeq, SeqBuilder) DNA Strider FASTA, GenBank/GenPept MacVector Vector NTI (pa4, pro, and VNTI database) Support for standalone protein sequence files, including conversion from translated DNA features to protein sequences.No Comments Changes in version 3.0 (Dec 21, 2015) New Functionality Version 3.0 By Michael | Release Notes From Blog | Ensured correct Gibson Assembly when one or more fragments are flipped.(Reported by Evan Johnson, Yelena Freyzon, and Erin Chown) ![]() Restored the normal click-and-drag selection behavior on Mac OS X 10.7.Prevented an instability issue when right clicking an aligned sequence summary in Sequence view and choosing “Hide Sequence”.Improved the flexibility of the importer for GenBank files.(Reported by Abby Sewell, Nick Matinyan, and others) Fixed an issue where aligned sequences traces sometimes failed to show chromatogram data or properly embed within the file when saving on Windows.Improved automatic annotation for misc_RNA features.Added “transOMIC” to the Sequence Author menu.Ability to use the Save menu button in the toolbar to export all primer data when no primers are selected.No Comments Changes in version 3.0.2 (Jan 2, 2016) New Functionality To remove duplicates, sort the quadrangles then remove the quadrangles or use hash table.Version 3.0.2 By Michael | Release Notes From Blog | Traverse the graph for all node to find the quadrangles for a certain depth. I have another approach to find the quadrangles. If ( p=i || p=j || p=k || G(p,i)=0 || G(p,k) = 0)Įdge inputs by using vertices index (Note: starting from "1" not "0"): % G(sub2ind(size(G),t, v))=1 % fill the symmetric position % For single edge graph, Build the matrix for graph: % For muilt-edge graph, Build the matrix for graph: The following MATLAB solution can only find every unique quadrangle for Case-1, but failed in Case-2, i.e. There are only five unique quadrangles (ignore the relative order of the vertex sequence): 1 2 3 4 In the following undirected complete graph of five points: 5 10 M is the final unique quadrangle count you have found. Output: An M-by-4 matrix or list of arrays. Then the following lines input each edge by each time. Here we use adjacent matrix (for undirected graph, each physical edge is inputted once in the following description), the first two numbers in the 1st line is the vertex number and edge number respectively. Input: The graph can be stored by whatever format you prefer. ![]() For example, and are the same quadrangle. The task is to find all the unique quadrangles, by "unique", we mean: if two quadrangles have all the four points be the same but only the relative order is different, then the two are treated as the "same" quadrangle. Given an planar undirected graph with n points marked by integer number
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